David Spieler

David Spieler

Former Member

PhD Student

Modeling and Simulation Group, Saarland University

About Me

I was a PhD student at the chair of Modeling and Simulation (former ALMA Junior Research Group) from December 2009 until June 2014. From July 2014 to September 2015 I was employed as a system developer at Bosch SoftTec in Hildesheim. From October 2015 until August 2018 I worked as a product owner for big data topics at Audi AG in Ingolstadt. In September 2018, I joined the University of Applied Sciences Munich as a professor for machine learning.

You can visit my new homepage here.

My main research interests for my PhD were:

  • Numerical steady-state analysis of stochastic hybrid systems,
  • sensitivity analysis and parameter estimation of biochemical systems,
  • retrival of geometric bounds for the steady state distributions of structured continuous time Markov chains (CTMC) with infinite state-space by the use of Lyapunov functions, as implemented e.g. in the Geobound tool,
  • deterministic timed automata (DTA) as a specification mechanism for CTMC,
  • and detecting oscillatory behavior in discrete stochastic models of chemical reaction networks.

Publications

  • D. Spieler, Numerical Analysis of long-run properties for Markov Population Models, PhD thesis, 2014 (link).
  • D. Spieler, E. M. Hahn, L. Zhang: Model Checking CSL for Markov Population Models, QAPL, EPTCS (technical report), 2014.
  • A. Andreychenko, T. Krüger, D. Spieler: Analyzing oscillatory behavior with formal methods, ROCKS Autumn School Proceedings, LNCS, 2014.
  • D. Spieler, V. Wolf: Efficient Steady State Analysis of Multimodal Markov Chains, ASMTA 2013, LNCS, Springer, 2013.
  • D. Spieler: Characterizing oscillatory and noisy periodic behavior in Markov population models, QEST 2013, LNCS, Springer, 2013.
  • A. Andreychenko, L. Mikeev, D. Spieler, V. Wolf: Approximate maximum likelihood estimation for stochastic chemical kinetics, Journal on Bioinformatics and Systems Biology, Springer, 2012.
  • L. Mikeev, M. Neuhäußer, D. Spieler, V. Wolf: On-the-fly verification and optimization of DTA-properties for large Markov chains, Formal Methods in System Design, 2012.
  • Arand J., Spieler D., Karius T., Branco M. R., Meilinger D., et al.: In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases, PLoS Genet 8(6): e1002750. doi:10.1371/journal.pgen.1002750, 2012.
  • Dayar, T., Sandmann, W., Spieler, D., and Wolf, V.: Infinite Level–Dependent QBDs and Matrix Analytic Solutions for Stochastic Chemical Kinetics, Advances in Applied Probability, 43.4, 2011.
  • Dayar, T., Hermanns, H., Spieler, D., and Wolf, V.: Bounding the Equilibrium Distribution of Markov Population Models, Numerical Linear Algebra with Applications, 2011.
  • Andreychenko, A., Mikeev, L., Spieler, D., and Wolf, V.: Parameter Identification for Markov Models of Biochemical Reactions, Proceedings of the 23rd International Conference on Computer Aided Verification (CAV'11), 2011.
  • Andreychenko A, Mikeev L, Spieler D, Wolf V: Approximate Maximum Likelihood Estimation for Stochastic Chemical Kinetics, In Proceedings of WCSB 2011, 2011.
  • Eisentraut C., D. Spieler: Fault, Compensation and Termination in WS-BPEL 2.0 – A Comparative Analysis, WS-FM ‘08

Code

Other Work

I reviewed manuscripts for CAV 2013, CMSB 2010, CMSB 2011, CMSB 2012, CMSB 2013, CONCUR 2013, CS2BIO 2010, DSN PDS 2010, ESOP 2013, FORMATS 2010, HSCC 2013, MMB 2011, QEST 2010, QEST 2012, QEST 2013, ROCKS 2013, TACAS 2011, TACAS 2013, TMS DEVS 2013, TMS DEVS 2014, WSC 2012, YRCONCUR 2012.

Education

Publications (6)

2013

2 papers

On-the-fly verification and optimization of DTA-properties for large Markov chains

2013 — Formal Methods in System Design

@article{mikeevOnTheFlyVerificationAndOptimization2013,
 author = {Linar Mikeev and Martin R. Neuhäußer and David Spieler and Verena Wolf},
 doi = {10.1007/s10703-012-0165-1},
 editor = {Nicht bekannt},
 journal = {Formal Methods in System Design},
 month = {10},
 number = {2},
 pages = {313-337},
 publisher = {Springer US, USA},
 title = {On-the-fly verification and optimization of DTA-properties for large Markov chains},
 volume = {43},
 year = {2013}
}
DOI

Efficient Steady State Analysis of Multimodal Markov Chains

2013 — Analytical and Stochastic Modeling Techniques and Applications. International Conference on Analytical and Stochastic Modeling Techniques and Applications (ASMTA-2013), 20th International Conference, ASMTA 2013, July 8-10, Gent, Belgium

@inproceedings{spielerEfficientSteadyStateAnalysis2013,
 author = {David Spieler and Verena Wolf},
 booktitle = {Analytical and Stochastic Modeling Techniques and Applications. International Conference on Analytical and Stochastic Modeling Techniques and Applications (ASMTA-2013), 20th International Conference, ASMTA 2013, July 8-10, Gent, Belgium},
 doi = {10.1007/978-3-642-39408-9_27},
 editor = {Alexander Dudin and Koen De Turck},
 isbn = {9783642394089},
 month = {7},
 pages = {380-395},
 publisher = {Springer Berlin Heidelberg, Heidelberg},
 title = {Efficient Steady State Analysis of Multimodal Markov Chains},
 year = {2013}
}
DOI

2012

2 papers

In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases

2012 — PLOS Genetics

@article{arandInVivoControlOf2012,
 author = {Julia Arand and David Spieler and Tommy Karius and Miguel R. Branco and Daniela Meilinger and Alexander Meissner and Thomas Jenuwein and Guoliang Xu and Heinrich Leonhardt and Verena Wolf and Jörn Walter},
 doi = {10.1371/journal.pgen.1002750},
 journal = {PLOS Genetics},
 month = {6},
 number = {6},
 pages = {1-11},
 publisher = {PLOS},
 title = {In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases},
 url = {https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1002750},
 volume = {8},
 year = {2012}
}
DOI URL

Approximate maximum likelihood estimation for stochastic chemical kinetics

2012 — EURASIP Journal on Bioinformatics and Systems Biology

@article{andreychenkoApproximateMaximumLikelihoodEstimation2012,
 author = {Aleksander Andreychenko and Linar Mikeev and David Spieler and Verena Wolf},
 doi = {10.1186/1687-4153-2012-9},
 journal = {EURASIP Journal on Bioinformatics and Systems Biology},
 number = {1},
 pages = {1-14},
 publisher = {Springer Nature},
 title = {Approximate maximum likelihood estimation for stochastic chemical kinetics},
 url = {https://doi.org/10.1186/1687-4153-2012-9},
 volume = {2012},
 year = {2012}
}
DOI URL

2011

2 papers

Infinite level-dependent QBD processes and matrix-analytic solutions for stochastic chemical kinetics

2011 — Advances in Applied Probability

@article{dayarInfiniteLevelDependentQBDProcesses2011,
 author = {Tuğrul Dayar and Werner Sandmann and David Spieler and Verena Wolf},
 doi = {10.1239/aap/1324045696},
 journal = {Advances in Applied Probability},
 month = {12},
 number = {4},
 pages = {1005-1026},
 publisher = {Cambridge University Press},
 title = {Infinite level-dependent QBD processes and matrix-analytic solutions for stochastic chemical kinetics},
 volume = {43},
 year = {2011}
}
DOI

Bounding the equilibrium distribution of Markov population models

2011 — Numerical Linear Algebra with Applications

@article{dayarBoundingTheEquilibriumDistribution2011,
 author = {Tuǧrul Dayar and Holger Hermanns and David Spieler and Verena Wolf},
 doi = {10.1002/nla.795},
 journal = {Numerical Linear Algebra with Applications},
 month = {10},
 number = {6},
 pages = {931-946},
 publisher = {John Wiley & Sons, Ltd, England},
 title = {Bounding the equilibrium distribution of Markov population models},
 volume = {18},
 year = {2011}
}
DOI

Teaching (12)

  • Data Networks Lab

    Lecturer, in Winter 2013/14
    Seminar at Saarland University

  • Data Networks

    Assistant, in Summer 2013
    Lecture at Saarland University

  • Parameter Estimation in Markov Models

    Assistant, in Summer 2013
    Seminar at Saarland University

  • Anwendungen von Markovketten

    Assistant, in Winter 2012/13
    Proseminar at Saarland University

  • Quantitative Model Checking

    Lecturer, in Summer 2012
    Lecture at Saarland University

  • Stochastic Simulation Techniques

    Assistant, in Winter 2011/12
    Seminar at Saarland University

  • Data Networks

    Assistant, in Summer 2011
    Saarland University

  • Quantitative Model Checking

    Assistant, in Summer 2010
    Saarland University

  • Concurrent Programming

    Student Assistant, in Summer 2009
    Saarland University

  • Concurrent Programming

    Student Assistant, in Summer 2008
    Saarland University

  • Programmierung 2

    Student Assistant, in Summer 2007
    Saarland University

  • Programmierung 1

    Student Assistant, in Winter 2006/07
    Saarland University