About Me
I was a PhD student at the chair of Modeling and Simulation (former ALMA Junior Research Group) from December 2009 until June 2014. From July 2014 to September 2015 I was employed as a system developer at Bosch SoftTec in Hildesheim. From October 2015 until August 2018 I worked as a product owner for big data topics at Audi AG in Ingolstadt. In September 2018, I joined the University of Applied Sciences Munich as a professor for machine learning.
You can visit my new homepage here.
My main research interests for my PhD were:
- Numerical steady-state analysis of stochastic hybrid systems,
- sensitivity analysis and parameter estimation of biochemical systems,
- retrival of geometric bounds for the steady state distributions of structured continuous time Markov chains (CTMC) with infinite state-space by the use of Lyapunov functions, as implemented e.g. in the Geobound tool,
- deterministic timed automata (DTA) as a specification mechanism for CTMC,
- and detecting oscillatory behavior in discrete stochastic models of chemical reaction networks.
Publications
- D. Spieler, Numerical Analysis of long-run properties for Markov Population Models, PhD thesis, 2014 (link).
- D. Spieler, E. M. Hahn, L. Zhang: Model Checking CSL for Markov Population Models, QAPL, EPTCS (technical report), 2014.
- A. Andreychenko, T. Krüger, D. Spieler: Analyzing oscillatory behavior with formal methods, ROCKS Autumn School Proceedings, LNCS, 2014.
- D. Spieler, V. Wolf: Efficient Steady State Analysis of Multimodal Markov Chains, ASMTA 2013, LNCS, Springer, 2013.
- D. Spieler: Characterizing oscillatory and noisy periodic behavior in Markov population models, QEST 2013, LNCS, Springer, 2013.
- A. Andreychenko, L. Mikeev, D. Spieler, V. Wolf: Approximate maximum likelihood estimation for stochastic chemical kinetics, Journal on Bioinformatics and Systems Biology, Springer, 2012.
- L. Mikeev, M. Neuhäußer, D. Spieler, V. Wolf: On-the-fly verification and optimization of DTA-properties for large Markov chains, Formal Methods in System Design, 2012.
- Arand J., Spieler D., Karius T., Branco M. R., Meilinger D., et al.: In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases, PLoS Genet 8(6): e1002750. doi:10.1371/journal.pgen.1002750, 2012.
- Dayar, T., Sandmann, W., Spieler, D., and Wolf, V.: Infinite Level–Dependent QBDs and Matrix Analytic Solutions for Stochastic Chemical Kinetics, Advances in Applied Probability, 43.4, 2011.
- Dayar, T., Hermanns, H., Spieler, D., and Wolf, V.: Bounding the Equilibrium Distribution of Markov Population Models, Numerical Linear Algebra with Applications, 2011.
- Andreychenko, A., Mikeev, L., Spieler, D., and Wolf, V.: Parameter Identification for Markov Models of Biochemical Reactions, Proceedings of the 23rd International Conference on Computer Aided Verification (CAV'11), 2011.
- Andreychenko A, Mikeev L, Spieler D, Wolf V: Approximate Maximum Likelihood Estimation for Stochastic Chemical Kinetics, In Proceedings of WCSB 2011, 2011.
- Eisentraut C., D. Spieler: Fault, Compensation and Termination in WS-BPEL 2.0 – A Comparative Analysis, WS-FM ‘08
Code
- JavaQuON: A lightweight Java implementation of the QuON protocol
- Lispel: A minimal Lisp implementation in Java following the paper “The Roots of Lisp” by Paul Graham
Other Work
I reviewed manuscripts for CAV 2013, CMSB 2010, CMSB 2011, CMSB 2012, CMSB 2013, CONCUR 2013, CS2BIO 2010, DSN PDS 2010, ESOP 2013, FORMATS 2010, HSCC 2013, MMB 2011, QEST 2010, QEST 2012, QEST 2013, ROCKS 2013, TACAS 2011, TACAS 2013, TMS DEVS 2013, TMS DEVS 2014, WSC 2012, YRCONCUR 2012.
Education
Master, 2009
Saarland University
Model Checking of Oscillatory and Noisy Periodic Behavior in Markovian Population Models
Bachelor, 2008
Saarland University
Scope-based Fault-, Compensation- and Termination-Handling in WS-BPEL 2.0
Publications (6)
2013
On-the-fly verification and optimization of DTA-properties for large Markov chains
2013 — Formal Methods in System Design
Efficient Steady State Analysis of Multimodal Markov Chains
2013 — Analytical and Stochastic Modeling Techniques and Applications. International Conference on Analytical and Stochastic Modeling Techniques and Applications (ASMTA-2013), 20th International Conference, ASMTA 2013, July 8-10, Gent, Belgium
2012
In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases
2012 — PLOS Genetics
Approximate maximum likelihood estimation for stochastic chemical kinetics
2012 — EURASIP Journal on Bioinformatics and Systems Biology
2011
2011 — Advances in Applied Probability
Bounding the equilibrium distribution of Markov population models
2011 — Numerical Linear Algebra with Applications
Teaching (12)
Data Networks Lab
Lecturer, in Winter 2013/14
Seminar at Saarland UniversityData Networks
Assistant, in Summer 2013
Lecture at Saarland UniversityParameter Estimation in Markov Models
Assistant, in Summer 2013
Seminar at Saarland UniversityAnwendungen von Markovketten
Assistant, in Winter 2012/13
Proseminar at Saarland UniversityQuantitative Model Checking
Lecturer, in Summer 2012
Lecture at Saarland UniversityStochastic Simulation Techniques
Assistant, in Winter 2011/12
Seminar at Saarland UniversityData Networks
Assistant, in Summer 2011
Saarland UniversityQuantitative Model Checking
Assistant, in Summer 2010
Saarland UniversityConcurrent Programming
Student Assistant, in Summer 2009
Saarland UniversityConcurrent Programming
Student Assistant, in Summer 2008
Saarland UniversityProgrammierung 2
Student Assistant, in Summer 2007
Saarland UniversityProgrammierung 1
Student Assistant, in Winter 2006/07
Saarland University