2026

8 entries

Assay-Based Machine Learning: Rethinking Evaluation in Drug Discovery

2026 — Digital Discovery

@article{grossAssayBasedMachineLearningRethinking2026,
 author = {Groß, Joschka and Backenköhler, Michael and Volkamer, Andrea},
 doi = {10.1039/D6DD00472E},
 eprint = {https://pubs.rsc.org/dd/article-pdf/doi/10.1039/D6DD00472E/15052126/d6dd00472e.pdf},
 issn = {2635-098X},
 journal = {Digital Discovery},
 month = {11},
 title = {Assay-Based Machine Learning: Rethinking Evaluation in Drug Discovery},
 url = {https://doi.org/10.1039/D6DD00472E},
 year = {2026}
}
DOI URL

Chaotic and complex dynamics expose the limits of counterfactual reasoning

2026 — Scientific Reports (Sci Rep)

@article{aalailaChaoticAndComplexDynamics2026,
 author = {Yahya Aalaila and Gerrit Großmann and Sumantrak Mukherjee and Jonas Wahl and Sebastian Vollmer},
 doi = {10.1038/s41598-026-52349-2},
 journal = {Scientific Reports (Sci Rep)},
 month = {6},
 number = {1},
 pages = {1-14},
 publisher = {Springer Nature},
 title = {Chaotic and complex dynamics expose the limits of counterfactual reasoning},
 url = {https://www.nature.com/articles/s41598-026-52349-2},
 volume = {16},
 year = {2026}
}
DOI URL

Evaluation beyond goodness of fit: Quantifying biophysical alignment of AI models for kinase-centric drug discovery

2026 — Artificial Intelligence in the Life Sciences (AILSCI)

@article{grossEvaluationBeyondGoodnessOf2026,
 author = {Joschka Groß and Michael Backenköhler and Paula Linh Kramer and Raquel López-Ríos De Castro and Guillermo Pérez-Hernández and Verena Wolf and Andrea Volkamer},
 doi = {10.1016/j.ailsci.2026.100169},
 journal = {Artificial Intelligence in the Life Sciences (AILSCI)},
 month = {6},
 number = {article 100169},
 pages = {1-17},
 publisher = {Elsevier},
 title = {Evaluation beyond goodness of fit: Quantifying biophysical alignment of AI models for kinase-centric drug discovery},
 url = {https://www.sciencedirect.com/science/article/pii/S2667318526000176?via%3Dihub},
 volume = {9},
 year = {2026}
}
DOI URL

Causal inference on process graphs: Causal structure and effect identification

2026 — Bernoulli

PDF
@article{reiterCausalInferenceOnProcess2026,
 author = {Nicolas-Domenic Reiter and Jonas Wahl and Andreas Gerhardus and Jakob Runge},
 doi = {10.3150/25-BEJ1909},
 journal = {Bernoulli},
 month = {5},
 number = {2},
 pages = {1356-1382},
 publisher = {Bernoulli Society for Mathematical Statistics and Probability},
 title = {Causal inference on process graphs: Causal structure and effect identification},
 url = {https://www.dfki.de/fileadmin/user_upload/import/16775_casual_inference_on_process_graphs.pdf},
 volume = {32},
 year = {2026}
}
DOI

Customkinfraglib: Filtering the kinase-focused fragmentation library

2026 — ACS omega

@article{linhkramerCustomkinfraglibFilteringTheKinaseFocused2026,
 author = {Linh Kramer, Paula and Buchthal, Katharina and Sydow, Dominique and Sonja Leo, Katharina and Volkamer, Andrea},
 doi = {10.1021/acsomega.5c12231},
 eprint = {https://pubs.acs.org/acsodf/article-pdf/11/10/16369/63264601/ao5c12231.pdf},
 issn = {2470-1343},
 journal = {ACS omega},
 month = {03},
 number = {10},
 pages = {16369--16380},
 publisher = {ACS Publications},
 title = {Customkinfraglib: Filtering the kinase-focused fragmentation library},
 url = {https://doi.org/10.1021/acsomega.5c12231},
 volume = {11},
 year = {2026}
}
DOI URL

B-cos GNNs: Faithful Explanations through Dynamic Linearity

2026 — arXiv preprint arXiv:2605.19778

@article{grossBCosGNNsFaithfulExplanations2026,
 author = {Groß, Joschka and Solanki, Mohammad Shaique and Wolf, Verena},
 journal = {arXiv preprint arXiv:2605.19778},
 title = {B-cos GNNs: Faithful Explanations through Dynamic Linearity},
 year = {2026}
}

PGTG: Procedurally Generated Grid-Based Traffic Gym

2026 — Reinforcement Learning Journal

PDF
@article{meyerPGTGProcedurallyGeneratedGridBased2026,
 author = {Joshua Meyer and Felix Maurice Kuntz and Verena Wolf and Jörg Hoffmann and Timo P. Gros},
 journal = {Reinforcement Learning Journal},
 pages = {},
 title = {PGTG: Procedurally Generated Grid-Based Traffic Gym},
 url = {https://rlj.cs.umass.edu/2026/papers/Paper32.pdf},
 volume = {7},
 year = {2026}
}
Code Poster

What are AI systems? Rethinking the core definition in the EU AI Act

2026 — Computer Law & Security Review

PDF
@article{meinelWhatAreAISystems2026,
 author = {Philip Meinel and Kevin Baum and Holger Hermanns and Emily Pöppelmann and Markus Langer and Anne Lauber-Ronsberg},
 doi = {10.1016/j.clsr.2026.106373},
 journal = {Computer Law & Security Review},
 number = {106373},
 pages = {1-12},
 publisher = {Elsevier},
 title = {What are AI systems? Rethinking the core definition in the EU AI Act},
 url = {https://www.sciencedirect.com/science/article/pii/S2212473X26001148},
 volume = {62},
 year = {2026}
}
DOI URL

2025

7 entries

The Journey of Data: Lessons Learned in Modeling Kinase Affinity, Selectivity, and Resistance [Article v1. 0]

2025 — Living Journal of Computational Molecular Science (LiveCoMS)

PDF
@article{castroTheJourneyOfData2025,
 author = {Raquel López-Ríos de Castro and Jaime Rodríguez-Guerra and David Schaller and Talia K Kimber and Corey Taylor and Jessica B White and Michael Backenköhler and Joschka Groß and Alexander M Payne and Benjamin Kaminow and Ivan Pulido and Sukrit Singh and Paula Linh Kramer and Guilermo Pérez-Hernández and Andrea Volkamer and John D Chodera},
 doi = {10.33011/livecoms.6.1.3875},
 editor = {David L. Mobley and Michael R. Shirts and Daniel M. Zuckerman},
 journal = {Living Journal of Computational Molecular Science (LiveCoMS)},
 month = {11},
 number = {1},
 pages = {3875-3875},
 publisher = {University of Colorado Boulder, Boulder, Colorado, USA},
 title = {The Journey of Data: Lessons Learned in Modeling Kinase Affinity, Selectivity, and Resistance [Article v1. 0]},
 url = {https://www.dfki.de/fileadmin/user_upload/import/16917_The_Journey_of_Data_Lessons_Learned_in_Modeling_Ki.pdf},
 volume = {6},
 year = {2025}
}
DOI

Outcomes Addressed by Whole-Body Electromyostimulation Trials in Sportspeople and Athletes—An Evidence Map Summarizing and Categorizing Current Findings

2025 — Sports

@article{reinhardtOutcomesAddressedByWholeBody2025,
 author = {Svenja Reinhardt and Joshua Berger and Matthias Kohl and Simon von Stengel and Michael Uder and Wolfgang Kemmler},
 doi = {10.3390/sports13090302},
 journal = {Sports},
 month = {9},
 number = {302},
 pages = {1-25},
 publisher = {MDPI},
 title = {Outcomes Addressed by Whole-Body Electromyostimulation Trials in Sportspeople and Athletes—An Evidence Map Summarizing and Categorizing Current Findings},
 url = {https://www.mdpi.com/2075-4663/13/9/302},
 volume = {13(9)},
 year = {2025}
}
DOI URL

Sortability of Time Series Data

2025 — Transactions on Machine Learning Research (TMLR)

PDF
@article{lohseSortabilityOfTimeSeries2025,
 author = {Christopher Lohse and Jonas Wahl},
 editor = {Adam Arany},
 journal = {Transactions on Machine Learning Research (TMLR)},
 month = {7},
 pages = {---},
 publisher = {-},
 title = {Sortability of Time Series Data},
 url = {https://openreview.net/forum?id=OGvmCpcHdV},
 volume = {-},
 year = {2025}
}
URL

Reference values for static posturography of sportive and healthy adults aged 18-30 years

2025 — BMC Sports Science, Medicine and Rehabilitation

@article{beckerReferenceValuesForStatic2025,
 author = {Stephan Becker and Anna Thomas and Lilli Ulrich and Laura Becker and Carlo Dindorf and Joshua Berger and Michael Fröhlich},
 doi = {10.1186/s13102-025-01128-z},
 journal = {BMC Sports Science, Medicine and Rehabilitation},
 month = {4},
 number = {94},
 pages = {1-11},
 publisher = {BioMed Central},
 title = {Reference values for static posturography of sportive and healthy adults aged 18-30 years},
 url = {https://link.springer.com/article/10.1186/s13102-025-01128-z#citeas},
 volume = {17},
 year = {2025}
}
DOI URL

Influence of WB-EMS on strength endurance parameters and subjectively perceived back pain: A multicentre study

2025 — Scientific Journal of Sport and Performance (SJSP)

@article{bergerInfluenceOfWBEMSOn2025,
 author = {Joshua Berger and Patrick Berndt and Christoph Eifler and Wolfgang Kemmler and Michael Fröhlich},
 doi = {10.55860/ULHO2155},
 journal = {Scientific Journal of Sport and Performance (SJSP)},
 month = {3},
 pages = {285-299},
 publisher = {Asociación Española de Análisis del Rendimiento Deportivo (AEAREDO)},
 title = {Influence of WB-EMS on strength endurance parameters and subjectively perceived back pain: A multicentre study},
 url = {https://sjsp.aearedo.es/index.php/sjsp/article/view/influence-wb-ems-strength-endurance-back-pain},
 volume = {4},
 year = {2025}
}
DOI URL

A Roadmap for Responsible Robotics: Promoting Human Agency and Collaborative Efforts

2025 — IEEE Robotics & Automation Magazine

@article{araizaillanARoadmapForResponsible2025,
 author = {Dejanira Araiza-Illan and Kevin Baum and Helen Beebee and Raja Chatila and Sarah Moth-Lund Christensen and Simon Coghlan and Emily Collins and S.Kate Conroy and Alcino Cunha and Anna Dobrosovestnova and Hein Duijf and Vanessa Evers and Michael Fisher and Nico Hochgeschwender and Nadin Kökciyan and Séverin Lemaignan and Francisco Rodriguez-Lera and Sara Ljungblad and Martin Magnusson and Masoumeh Mansouri and Michael Milford and AJung Moon and Thomas M. Powers and Pericle Salvini and Teresa Scantamburlo and Nick Schuster and Marija Slavkovik and Ufuk Topcu and Daniel Vanegas and Andrzej Wasowski and Yi Yang},
 doi = {10.1109/MRA.2025.3620148},
 journal = {IEEE Robotics & Automation Magazine},
 number = {4},
 pages = {12-24},
 publisher = {IEEE},
 title = {A Roadmap for Responsible Robotics: Promoting Human Agency and Collaborative Efforts},
 url = {https://ieeexplore.ieee.org/abstract/document/11236462/authors#authors},
 volume = {32},
 year = {2025}
}
DOI URL

How do we assess the trustworthiness of AI? Introducing the trustworthiness assessment model (TrAM)

2025 — Computers in Human Behavior

PDF
@article{schlickerHowDoWeAssess2025,
 author = {Nadine Schlicker and Kevin Baum and Alarith Ude and Sarah Sterz and Martin C. Hirsch and Markus Langer},
 editor = {Matthieu J. Guitton},
 journal = {Computers in Human Behavior},
 pages = {1-19},
 publisher = {Elsevier},
 title = {How do we assess the trustworthiness of AI? Introducing the trustworthiness assessment model (TrAM)},
 url = {https://www.sciencedirect.com/science/article/pii/S0747563225001189},
 volume = {170},
 year = {2025}
}
URL

2024

10 entries

Effects of a symptom-titrated exercise program on fatigue and quality of life in people with post-COVID condition–a randomized controlled trial

2024 — Nature Scientific Reports (Sci Rep)

@article{barzEffectsOfASymptomTitrated2024,
 author = {Andreas Barz and Joshua Berger and Marco Speicher and Arne Morsch and Markus Wanjek and Jürgen Rissland and Johannes Jäger},
 doi = {10.1038/s41598-024-82584-4},
 journal = {Nature Scientific Reports (Sci Rep)},
 month = {12},
 number = {744},
 pages = {1-11},
 publisher = {Springer Nature},
 title = {Effects of a symptom-titrated exercise program on fatigue and quality of life in people with post-COVID condition–a randomized controlled trial},
 url = {https://www.nature.com/articles/s41598-024-82584-4#citeas},
 volume = {15},
 year = {2024}
}
DOI URL

Effective Human Oversight of AI-Based Systems: A Signal Detection Perspective on the Detection of Inaccurate and Unfair Outputs

2024 — Minds and Machines - Journal for Artificial Intelligence, Philosophy and Cognitive Science

@article{langerEffectiveHumanOversightOf2024,
 author = {Markus Langer and Kevin Baum and Nadine Schlicker},
 doi = {10.1007/s11023-024-09701-0},
 journal = {Minds and Machines - Journal for Artificial Intelligence, Philosophy and Cognitive Science},
 month = {11},
 number = {1},
 pages = {1-30},
 publisher = {Springer Nature},
 title = {Effective Human Oversight of AI-Based Systems: A Signal Detection Perspective on the Detection of Inaccurate and Unfair Outputs},
 volume = {35},
 year = {2024}
}
DOI

Response: Commentary: Revised contraindications for the use of non-medical WB-electromyostimulation. Evidence-based German consensus recommendations”

2024 — Frontiers in Sports and Active Living

@article{kemmlerResponseCommentaryRevisedContraindications2024,
 author = {Wolfgang Kemmler and Michael Fröhlich and Oliver Ludwig and Christoph Eifler and Joshua Berger and Florian Micke and Heinz Kleinöder and Bernd Wegener and Christoph Zinner and Frank C Mooren and Marc Teschler and Andre Filipovic and S Müller and K England and Jens Vatter and Sebastian Authenrieth and Matthias Kohl and Simon von Thaden},
 doi = {10.3389/fspor.2024.1473103},
 editor = {Alessandra Di Cagno},
 journal = {Frontiers in Sports and Active Living},
 month = {10},
 pages = {1473103},
 publisher = {Frontiers Media SA},
 title = {Response: Commentary: Revised contraindications for the use of non-medical WB-electromyostimulation. Evidence-based German consensus recommendations”},
 volume = {6},
 year = {2024}
}
DOI

Acting for the Right Reasons: Creating Reason-Sensitive Artificial Moral Agents

2024 — ArXiv e-prints (arxiv)

@article{baumActingForTheRight2024,
 author = {Kevin Baum and Lisa Dargasz and Felix Jahn and Timo P. Gros and Verena Wolf},
 doi = {arXiv:2409.15014},
 journal = {ArXiv e-prints (arxiv)},
 month = {9},
 pages = {1-10},
 publisher = {arXiv},
 title = {Acting for the Right Reasons: Creating Reason-Sensitive Artificial Moral Agents},
 volume = {1},
 year = {2024}
}
DOI

Motion Primitives as the Action Space of Deep Q-Learning for Planning in Autonomous Driving

2024 — IEEE Transactions on Intelligent Transportation Systems

@article{schneiderMotionPrimitivesAsThe2024,
 author = {Tristan Schneider and Matheus V. A. Pedrosa and Timo P. Gros and Verena Wolf and Kathrin Flaßkamp},
 doi = {10.1109/TITS.2024.3436530},
 journal = {IEEE Transactions on Intelligent Transportation Systems},
 month = {9},
 number = {11},
 pages = {17852-17864},
 publisher = {IEEE},
 title = {Motion Primitives as the Action Space of Deep Q-Learning for Planning in Autonomous Driving},
 volume = {25},
 year = {2024}
}
DOI

Assessing the Impact of Neuromuscular Electrical Stimulation-Based Fingerboard Training versus Conventional Fingerboard Training on Finger Flexor Endurance in Intermediate to Advanced Sports Climbers: A Randomized Controlled Study

2024 — Sensors - Open Access Journal (Sensors)

@article{dindorfAssessingTheImpactOf2024,
 author = {Carlo Dindorf and Jonas Dully and Joshua Berger and Stephan Becker and Emanuel Wolf and Steven Simon and Eva Bartaguiz and Wolfgang Kemmler and Michael Fröhlich},
 doi = {10.3390/s24134100},
 journal = {Sensors - Open Access Journal (Sensors)},
 month = {6},
 number = {4100},
 pages = {1-16},
 publisher = {MDPI},
 title = {Assessing the Impact of Neuromuscular Electrical Stimulation-Based Fingerboard Training versus Conventional Fingerboard Training on Finger Flexor Endurance in Intermediate to Advanced Sports Climbers: A Randomized Controlled Study},
 url = {https://www.mdpi.com/1424-8220/24/13/4100},
 volume = {24},
 year = {2024}
}
DOI URL

Guided docking as a data generation approach facilitates structure-based machine learning on kinases

2024 — Journal of Chemical Information and Modeling (JCIM)

PDF
@article{backenkohlerGuidedDockingAsA2024,
 author = {Michael Backenköhler and Joschka Groß and Verena Wolf and Andrea Volkamer},
 doi = {10.1021/acs.jcim.4c00055},
 journal = {Journal of Chemical Information and Modeling (JCIM)},
 month = {5},
 number = {10},
 pages = {4009-4020},
 publisher = {ACS Publications, Washington DC},
 title = {Guided docking as a data generation approach facilitates structure-based machine learning on kinases},
 url = {https://pubs.acs.org/doi/10.1021/acs.jcim.4c00055},
 volume = {64},
 year = {2024}
}
DOI URL

Revised contraindications for the use of non-medical WB-electromyostimulation. Evidence-based German consensus recommendations

2024 — Frontiers in Sports and Active Living

@article{stengelRevisedContraindicationsForThe2024,
 author = {Simon von Stengel and Michael Fröhlich and Oliver Ludwig and Christoph Eifler and Joshua Berger and Heinz Kleinöder and Florian Micke and Bernd Wegener and Christoph Zinner and Frank C Mooren and Marc Teschler and Andre Filipovic and Stephan Müller and Keven England and Jens Vatter and Sebastian Authenrieth and Matthias Kohl and Wolfgang Kemmler},
 doi = {10.3389/fspor.2024.1371723},
 editor = {Alessandra Di Cagno},
 journal = {Frontiers in Sports and Active Living},
 month = {4},
 pages = {1371723},
 publisher = {Frontiers Media SA},
 title = {Revised contraindications for the use of non-medical WB-electromyostimulation. Evidence-based German consensus recommendations},
 volume = {6},
 year = {2024}
}
DOI

Software doping analysis for human oversight

2024 — Formal Methods in System Design

PDF
@article{biewerSoftwareDopingAnalysisFor2024,
 author = {Sebastian Biewer and Kevin Baum and Sarah Sterz and Holger Hermanns and Sven Hetmank and Markus Langer and Anne Lauber-Rönsberg and Franz Lehr},
 doi = {10.1007/s10703-024-00445-2},
 journal = {Formal Methods in System Design},
 month = {4},
 pages = {1-50},
 publisher = {Springer},
 title = {Software doping analysis for human oversight},
 url = {https://link.springer.com/article/10.1007/s10703-024-00445-2#Abs1},
 volume = {62},
 year = {2024}
}
DOI URL

Causal Inference for Spatial Data Analytics (Dagstuhl Seminar 24202)

2024 — Dagstuhl Reports

@article{tomkoCausalInferenceForSpatial2024,
 author = {Martin Tomko and Yanan Xin and Jonas Wahl},
 doi = {10.4230/DagRep.14.5.25},
 editor = {Martin Tomko and Yanan Xin and Jonas Wahl},
 journal = {Dagstuhl Reports},
 number = {5},
 pages = {25-57},
 publisher = {Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, Dagstuhl, Germany},
 title = {Causal Inference for Spatial Data Analytics (Dagstuhl Seminar 24202)},
 url = {https://drops.dagstuhl.de/entities/document/10.4230/DagRep.14.5.25},
 volume = {14},
 year = {2024}
}
DOI URL

2023

11 entries

DSMC Evaluation Stages: Fostering Robust and Safe Behavior in Deep Reinforcement Learning--Extended Version

2023 — ACM Transactions on Modeling and Computer Simulation (TOMACS)

@article{grosDSMCEvaluationStagesFostering2023,
 author = {Timo P. Gros and Joschka Groß and Daniel Höller and Jörg Hoffmann and Michaela Klauck and Hendrik Meerkamp and Nicola J. Müller and Lukas Schaller and Verena Wolf},
 doi = {10.1145/3607198},
 journal = {ACM Transactions on Modeling and Computer Simulation (TOMACS)},
 month = {10},
 number = {4},
 pages = {1-28},
 publisher = {ACM, New York, NY, USA},
 title = {DSMC Evaluation Stages: Fostering Robust and Safe Behavior in Deep Reinforcement Learning--Extended Version},
 volume = {33},
 year = {2023}
}
DOI

Influence of a long-term WB-EMS intervention on parameters of body composition and physical performance among individuals of different age decades between 19 and 81 years

2023 — Scientific Journal of Sport and Performance (SJSP)

@article{bergerInfluenceOfALongTerm2023,
 author = {Joshua Berger and Elena Janowicz and Oliver Ludwig and Markus Weineck and Wolfgang Kemmler and Michael Fröhlich},
 doi = {10.55860/LKHR6684},
 journal = {Scientific Journal of Sport and Performance (SJSP)},
 month = {8},
 number = {4},
 pages = {514-526},
 publisher = {ARD Asociación Española},
 title = {Influence of a long-term WB-EMS intervention on parameters of body composition and physical performance among individuals of different age decades between 19 and 81 years},
 volume = {2},
 year = {2023}
}
DOI

Neuro-explicit semantic segmentation of the diffusion cloud chamber

2023 — Review of Scientific Instruments

PDF
@article{mullerNeuroExplicitSemanticSegmentationOf2023,
 author = {Nicola J. Müller and Daniel Porawski and Lukas Wilde and Dennis Fink and Guillaume Trap and Annika Engel and Georges P. Schmartz},
 doi = {10.1063/5.0109284},
 editor = {Robert P. Behringer},
 journal = {Review of Scientific Instruments},
 month = {6},
 number = {6},
 pages = {063304},
 publisher = {AIP Publishing},
 title = {Neuro-explicit semantic segmentation of the diffusion cloud chamber},
 url = {https://www.dfki.de/fileadmin/user_upload/import/16919_Neuro-explicit_semantic_segmentation_of_the_diffus.pdf},
 volume = {94},
 year = {2023}
}
DOI

Vector Causal Inference between Two Groups of Variables

2023 — Proceedings of the AAAI Conference on Artificial Intelligence (AAAI)

@article{wahlVectorCausalInferenceBetween2023,
 author = {Jonas Wahl and Urmi Ninad and Jakob Runge},
 doi = {10.1609/aaai.v37i10.26450},
 journal = {Proceedings of the AAAI Conference on Artificial Intelligence (AAAI)},
 month = {6},
 number = {10},
 pages = {12305-12312},
 publisher = {AAAI Press},
 title = {Vector Causal Inference between Two Groups of Variables},
 url = {https://ojs.aaai.org/index.php/AAAI/article/view/26450},
 volume = {37},
 year = {2023}
}
DOI URL

Computer Science Methods for Effective and Sustainable Simulation Studies

2023 — Dagstuhl Reports

@article{caiComputerScienceMethodsFor2023,
 author = {Wentong Cai and  Philipp Andelfinger and  Luca Bortolussi and  Christopher Carothers and  Dong Kevin Jin and  Till Köster and  Michael Lees and  Jason Liu and  Margaret Loper and  Alessandro Pellegrini and  Wen Jun Tan and Verena Wolf},
 journal = {Dagstuhl Reports},
 month = {5},
 number = {10},
 pages = {1-44},
 publisher = {Dagstuhl Reports},
 title = {Computer Science Methods for Effective and Sustainable Simulation Studies},
 volume = {12},
 year = {2023}
}

Corrigendum: Position statement and updated international guideline for safe and effective whole-body electromyostimulation training-the need for common sense in WB-EMS application

2023 — Frontiers in Physiology

@article{kemmlerCorrigendumPositionStatementAnd2023,
 author = {Wolfgang Kemmler and Michael Fröhlich and Oliver Ludwig and Christoph Eifler and Simon von Thaden and Sebastian Willert and Marc Teschler and Anja Weissenfels and Heinz Kleinöder and Florian Micke and Nicolas Wirtz and Christoph Zinner and Andre Filipovic and Bernd Wegener and Joshua Berger and Alexandre Evangelista and Stefano D’ottavio and Chandandeep Singh and Amir Lerman and Unai A. Perez De Arrilucea Le Floc’h and Abraham Carle-Calo and Angel Guitierrez and Francisco J. Amaro-Gahete},
 doi = {10.3389/fphys.2023.1207584},
 editor = {Giuseppe D'Antona},
 journal = {Frontiers in Physiology},
 month = {5},
 pages = {1207584},
 publisher = {Frontiers Media SA, Switzerland},
 title = {Corrigendum: Position statement and updated international guideline for safe and effective whole-body electromyostimulation training-the need for common sense in WB-EMS application},
 volume = {14},
 year = {2023}
}
DOI

From Fear to Action: AI Governance and Opportunities for All

2023 — Frontiers in Computer Science

PDF
@article{baumFromFearToAction2023,
 author = {Kevin Baum and Joanna Bryson and Frank Dignum and Virginia Dignum and Marko Grobelnik and Holger Hoos and Morten Irgens and Paul Lukowicz and Catelijne Muller and Francesca Rossi and John Shawe-Taylor and Andreas Theodorou and Ricardo Vinuesa},
 doi = {10.3389/fcomp.2023.1210421},
 journal = {Frontiers in Computer Science},
 month = {5},
 pages = {0-0},
 publisher = {Frontiers Media},
 title = {From Fear to Action: AI Governance and Opportunities for All},
 url = {https://www.frontiersin.org/articles/10.3389/fcomp.2023.1210421/full},
 volume = {5},
 year = {2023}
}
DOI URL

TeachOpenCADD goes Deep Learning: Open-source Teaching Platform Exploring Molecular DL Applications

2023 — ChemRxiv

PDF
@article{backenkohlerTeachOpenCADDGoesDeepLearning2023,
 author = {Michael Backenköhler and Paula Linh Kramer and Joschka Groß and Gerrit Großmann and Roman Joeres and Azat Tagirdzhanov and Dominique Sydow and Hamza Ibrahim and Floriane Odje and Verena Wolf and Andrea Volkamer},
 doi = {10.26434/chemrxiv-2023-kz1pb},
 journal = {ChemRxiv},
 month = {5},
 pages = {---},
 publisher = {ChemRxiv.org},
 title = {TeachOpenCADD goes Deep Learning: Open-source Teaching Platform Exploring Molecular DL Applications},
 url = {https://doi.org/10.26434/chemrxiv-2023-kz1pb},
 volume = {ChemRxiv Online},
 year = {2023}
}
DOI URL

Unsupervised relational inference using masked reconstruction

2023 — Applied Network Science

PDF
@article{grossmannUnsupervisedRelationalInferenceUsing2023,
 author = {Gerrit Großmann and Julian Zimmerlin and Michael Backenköhler and Verena Wolf},
 doi = {10.1007/s41109-023-00542-x},
 journal = {Applied Network Science},
 month = {4},
 number = {18},
 pages = {1-21},
 publisher = {Springer},
 title = {Unsupervised relational inference using masked reconstruction},
 url = {https://appliednetsci.springeropen.com/articles/10.1007/s41109-023-00542-x},
 volume = {8},
 year = {2023}
}
DOI URL

Position statement and updated international guideline for safe and effective whole-body electromyostimulation training-the need for common sense in WB-EMS application

2023 — Frontiers in Physiology

@article{kemmlerPositionStatementAndUpdated2023,
 author = {Wolfgang Kemmler and Michael Fröhlich and Oliver Ludwig and Christoph Eifler and Simon Von Stengel and Sebastian Willert and Marc Teschler and Anja Weissenfels and Heinz Kleinöder and Florian Micke and Nicolas Wirtz and Christoph Zinner and Andre Filipovic and Bernd Wegener and Joshua Berger and Alexandre Evangelista and Stefano D’Ottavio and Jaskanwal Deep Singh Sara and Amir Lerman and Unai A Perez de Arrilucea Le Floc’h and Abraham Carle-Calo and Angel Guitierrez and Francisco J Amaro-Gahete},
 doi = {10.3389/fphys.2023.1174103},
 editor = {Giuseppe D’Antona},
 journal = {Frontiers in Physiology},
 month = {3},
 pages = {1174103},
 publisher = {Frontiers Media SA},
 title = {Position statement and updated international guideline for safe and effective whole-body electromyostimulation training-the need for common sense in WB-EMS application},
 volume = {14},
 year = {2023}
}
DOI

Analyzing neural network behavior through deep statistical model checking

2023 — International Journal on Software Tools for Technology Transfer (STTT)

@article{grosAnalyzingNeuralNetworkBehavior2023,
 author = {Timo P. Gros and Holger Hermanns and Jörg Hoffmann and Michaela Klauck and Marcel Steinmetz},
 journal = {International Journal on Software Tools for Technology Transfer (STTT)},
 number = {3},
 pages = {407-426},
 publisher = {Springer Berlin Heidelberg Berlin/Heidelberg},
 title = {Analyzing neural network behavior through deep statistical model checking},
 volume = {25},
 year = {2023}
}

2022

7 entries

Spatial Distribution of Muscular Effects of Acute Whole-Body Electromyostimulation at the Mid-Thigh and Lower Leg—A Pilot Study Applying Magnetic Resonance Imaging

2022 — Sensors - Open Access Journal (Sensors)

@article{gotzSpatialDistributionOfMuscular2022,
 author = {Marina Götz and Rafael Heiss and Simon von Stengel and Frank Roemer and Joshua Berger and Armin Nagel and Michael Uder and Wolfgang Kemmler},
 doi = {10.3390/s222410017},
 journal = {Sensors - Open Access Journal (Sensors)},
 month = {12},
 number = {24},
 pages = {10017},
 publisher = {MDPI, Switzerland},
 title = {Spatial Distribution of Muscular Effects of Acute Whole-Body Electromyostimulation at the Mid-Thigh and Lower Leg—A Pilot Study Applying Magnetic Resonance Imaging},
 volume = {22},
 year = {2022}
}
DOI

WB-EMS Market Development—Perspectives and Threats

2022 — International Journal of Environmental Research and Public Health

@article{bergerWBEMSMarketDevelopmentPerspectivesAnd2022,
 author = {Joshua Berger and Michael Fröhlich and Wolfgang Kemmler},
 doi = {10.3390/ijerph192114211},
 journal = {International Journal of Environmental Research and Public Health},
 month = {10},
 number = {21},
 pages = {14211},
 publisher = {MDPI, Switzerland},
 title = {WB-EMS Market Development—Perspectives and Threats},
 volume = {19},
 year = {2022}
}
DOI

Ethics for Nerds

2022 — The International Review of Information Ethics (IRIE)

@article{baumEthicsForNerds2022,
 author = {Kevin Baum and Sarah Sterz},
 doi = {10.29173/irie484},
 journal = {The International Review of Information Ethics (IRIE)},
 month = {8},
 number = {1},
 pages = {1-9},
 publisher = {IRIE, Edmonton, Alberta, Canada},
 title = {Ethics for Nerds},
 url = {https://www.dfki.de/fileadmin/user_upload/import/16844_IRIE+31+Baum,+Sterz.pdf},
 volume = {31},
 year = {2022}
}
DOI

Where are all the guns? Modeling firearm ownership in the United States

2022 — Patterns

@article{wahlWhereAreAllThe2022,
 author = {Jonas Wahl},
 doi = {10.1016/j.patter.2022.100571},
 journal = {Patterns},
 month = {8},
 number = {8},
 pages = {1-2},
 publisher = {Elsevier},
 title = {Where are all the guns? Modeling firearm ownership in the United States},
 url = {https://www.cell.com/patterns/fulltext/S2666-3899(22)00182-9},
 volume = {3},
 year = {2022}
}
DOI URL

A comprehensive approach for genome-wide efficiency profiling of DNA modifying enzymes

2022 — Cell Reports Methods

@article{kyriakopoulosAComprehensiveApproachFor2022,
 author = {Charalampos Kyriakopoulos and Karl Nordström and Paula Linh Kramer and Judith Yumiko Gottfreund and Abdulrahman Salhab and Julia Arand and Fabian Müller and Ferdinand von Meyenn and Gabriella Ficz and Wolf Reik and Verena Wolf and Jörn Walter and Pascal Giehr},
 doi = {10.1016/j.crmeth.2022.100187},
 journal = {Cell Reports Methods},
 month = {3},
 number = {3},
 pages = {1-23},
 publisher = {Cell Press},
 title = {A comprehensive approach for genome-wide efficiency profiling of DNA modifying enzymes},
 volume = {2},
 year = {2022}
}
DOI

Traces on diagram algebras I: Free partition quantum groups, random lattice paths and random walks on trees

2022 — Journal of the London Mathematical Society

@article{wahlTracesOnDiagramAlgebras2022,
 author = {Jonas Wahl},
 doi = {10.1112/jlms.12562},
 journal = {Journal of the London Mathematical Society},
 month = {3},
 number = {4},
 pages = {2324-2372},
 publisher = {John Wiley & Sons, Ltd},
 title = {Traces on diagram algebras I: Free partition quantum groups, random lattice paths and random walks on trees},
 url = {https://londmathsoc.onlinelibrary.wiley.com/doi/full/10.1112/jlms.12562},
 volume = {105},
 year = {2022}
}
DOI URL

From Responsibility to Reason-Giving Explainable Artificial Intelligence

2022 — Philosophy & Technology

@article{baumFromResponsibilityToReasonGiving2022,
 author = {Kevin Baum and Susanne Mantel and Eva Schmidt and Timo Speith},
 doi = {10.1007/s13347-022-00510-w},
 journal = {Philosophy & Technology},
 month = {2},
 number = {12 (2022)},
 pages = {1-30},
 publisher = {Springer Nature, The Netherlands},
 title = {From Responsibility to Reason-Giving Explainable Artificial Intelligence},
 url = {https://www.dfki.de/fileadmin/user_upload/import/16845_s13347-022-00510-w.pdf},
 volume = {35},
 year = {2022}
}
DOI

2021

8 entries

Effects of an 8-Week Whole-Body Electromyostimulation Training on Cycling Performance, Back Pain, and Posture of a 17-Year-Old Road Cyclist

2021 — International Journal of Athletic Therapy and Training (IJATT)

@article{bergerEffectsOfAn8Week2021,
 author = {Joshua Berger and Oliver Ludwig and Stephanie Becker and Wolfgang Kemmler and Michael Fröhlich},
 doi = {10.1123/ijatt.2020-0016},
 journal = {International Journal of Athletic Therapy and Training (IJATT)},
 month = {11},
 number = {2},
 pages = {96-100},
 publisher = {Human Kinetics},
 title = {Effects of an 8-Week Whole-Body Electromyostimulation Training on Cycling Performance, Back Pain, and Posture of a 17-Year-Old Road Cyclist},
 volume = {26},
 year = {2021}
}
DOI

Heterogeneity matters: Contact structure and individual variation shape epidemic dynamics

2021 — PLOS One

@article{grossmannHeterogeneityMattersContactStructure2021,
 author = {Gerrit Großmann and Michael Backenköhler and Verena Wolf},
 doi = {10.1371/journal.pone.0250050},
 editor = {Vygintas Gontis},
 journal = {PLOS One},
 month = {7},
 number = {7},
 pages = {1-19},
 publisher = {Public Library of Science},
 title = {Heterogeneity matters: Contact structure and individual variation shape epidemic dynamics},
 volume = {16},
 year = {2021}
}
DOI

Spare me the details: How the type of information about automated interviews influences applicant reactions

2021 — International Journal of Selection and Assessment

PDF
@article{baumSpareMeTheDetails2021,
 author = {Kevin Baum and Markus Langer and Cornelius J. König and Viviane Hähne and Daniel Oster and Timo Speith},
 doi = {10.1111/ijsa.12325},
 journal = {International Journal of Selection and Assessment},
 month = {6},
 number = {2},
 pages = {154-169},
 publisher = {Wiley & Sons},
 title = {Spare me the details: How the type of information about automated interviews influences applicant reactions},
 url = {https://www.dfki.de/fileadmin/user_upload/import/16848_Int_J_Selection_Assessment_-_2021_-_Langer_-_Spare_me_the_details__How_the_type_of_information_about_automated_interviews.pdf},
 volume = {29},
 year = {2021}
}
DOI

Efficacy of Whole-Body Electromyostimulation (WB-EMS) on Body Composition and Muscle Strength in Non-athletic Adults. A Systematic Review and Meta-Analysis

2021 — Frontiers in Physiology

@article{kemmlerEfficacyOfWholeBodyElectromyostimulation2021,
 author = {Wolfgang Kemmler and Mahdieh Shojaa and James Steele and Joshua Berger and Michael Fröhlich and Daniel Schoene and Simon von Thaden and Heinz Kleinöder and Matthias Kohl},
 doi = {10.3389/fphys.2021.640657},
 editor = {Emiliano Cè},
 journal = {Frontiers in Physiology},
 month = {2},
 pages = {640657},
 publisher = {Frontiers Media SA},
 title = {Efficacy of Whole-Body Electromyostimulation (WB-EMS) on Body Composition and Muscle Strength in Non-athletic Adults. A Systematic Review and Meta-Analysis},
 volume = {12},
 year = {2021}
}
DOI

Analytic solutions for stochastic hybrid models of gene regulatory networks

2021 — Journal of Mathematical Biology

@article{kurasovAnalyticSolutionsForStochastic2021,
 author = {Pavel Kurasov and Delio Mugnolo and Verena Wolf},
 doi = {10.1007/s00285-021-01549-7},
 journal = {Journal of Mathematical Biology},
 number = {1-2},
 publisher = {Springer Science and Business Media LLC},
 title = {Analytic solutions for stochastic hybrid models of gene regulatory networks},
 volume = {82},
 year = {2021}
}
DOI

Heading in Soccer: Does Kinematics of the Head-Neck-Torso Alignment Influence Head Acceleration?

2021 — Journal of Human Kinetics

@article{beckerHeadingInSoccerDoes2021,
 author = {Stephanie Becker and Joshua Berger and Oliver Ludwig and Daniel Günther and Jens Kelm and Michael Fröhlich},
 doi = {10.2478/hukin-2021-0012},
 journal = {Journal of Human Kinetics},
 month = {1},
 pages = {71-80},
 publisher = {PMC - PubMed Central},
 title = {Heading in Soccer: Does Kinematics of the Head-Neck-Torso Alignment Influence Head Acceleration?},
 volume = {77 (2021)},
 year = {2021}
}
DOI

What do we want from Explainable Artificial Intelligence (XAI)? – A stakeholder perspective on XAI and a conceptual model guiding interdisciplinary XAI research

2021 — Artificial Intelligence (AIJ)

PDF
@article{baumWhatDoWeWant2021,
 author = {Kevin Baum and Markus Langer and Daniel Oster and Timo Speith and Holger Hermanns and Lena Kästner and Eva Schmidt and Andreas Sesing},
 doi = {10.1016/j.artint.2021.103473},
 journal = {Artificial Intelligence (AIJ)},
 pages = {1-24},
 publisher = {Elsevier, Artificial intelligence},
 title = {What do we want from Explainable Artificial Intelligence (XAI)? – A stakeholder perspective on XAI and a conceptual model guiding interdisciplinary XAI research},
 url = {https://www.dfki.de/fileadmin/user_upload/import/16847_1-s2.0-S0004370221000242-main.pdf},
 volume = {296},
 year = {2021}
}
DOI

What to expect from opening up ‘black boxes’? Comparing perceptions of justice between human and automated agents

2021 — Computers in Human Behavior

PDF
@article{baumWhatToExpectFrom2021,
 author = {Kevin Baum and Nadine Schlicker and Markus Langer and Sonja K. Ötting and Cornelius J. König and Dieter Wallach},
 doi = {10.1016/j.chb.2021.106837},
 journal = {Computers in Human Behavior},
 pages = {1-57},
 publisher = {Pergamon},
 title = {What to expect from opening up ‘black boxes’? Comparing perceptions of justice between human and automated agents},
 url = {https://www.dfki.de/fileadmin/user_upload/import/16846_SchlicketEtAl_preprint.pdf},
 volume = {122},
 year = {2021}
}
DOI

2020

8 entries

Efficient simulation of non-Markovian dynamics on complex networks

2020 — PLOS ONE

@article{grossmannEfficientSimulationOfNonMarkovian2020,
 author = {Gerrit Großmann and Luca Bortolussi and Verena Wolf},
 doi = {10.1371/journal.pone.0241394},
 editor = {Hocine Cherifi},
 journal = {PLOS ONE},
 month = {10},
 number = {10},
 pages = {1-18},
 publisher = {PLOS ONE},
 title = {Efficient simulation of non-Markovian dynamics on complex networks},
 volume = {15},
 year = {2020}
}
DOI

Can a superimposed whole-body electromyostimulation intervention enhance the effects of a 10-week athletic strength training in youth elite soccer players?

2020 — Journal of Sports Science & Medicine (JSSM)

@article{ludwigCanASuperimposedWholeBody2020,
 author = {Oliver Ludwig and Joshua Berger and Torsten Schuh and Marco Backfisch and Stephan Becker and Michael Fröhlich},
 journal = {Journal of Sports Science & Medicine (JSSM)},
 month = {9},
 number = {3},
 pages = {535-546},
 publisher = {Department of Sports Medicine, Uludag University},
 title = {Can a superimposed whole-body electromyostimulation intervention enhance the effects of a 10-week athletic strength training in youth elite soccer players?},
 url = {https://pmc.ncbi.nlm.nih.gov/articles/PMC7429429/},
 volume = {19},
 year = {2020}
}
URL

Tracking the Race Between Deep Reinforcement Learning and Imitation Learning - Extended Version

2020 — ArXiv e-prints (arxiv)

@article{grosTrackingTheRaceBetween2020,
 author = {Timo P. Gros and Daniel Höller and Jörg Hoffmann and Verena Wolf},
 doi = {10.48550/arXiv.2008.00766},
 journal = {ArXiv e-prints (arxiv)},
 month = {8},
 number = {00766},
 pages = {1-19},
 publisher = {arXiv},
 title = {Tracking the Race Between Deep Reinforcement Learning and Imitation Learning - Extended Version},
 volume = {2008},
 year = {2020}
}
DOI

Effects of an Impulse Frequency Dependent 10-Week Whole-body Electromyostimulation Training Program on Specific Sport Performance Parameters

2020 — Journal of Sports Science & Medicine (JSSM)

@article{bergerEffectsOfAnImpulse2020,
 author = {Joshua Berger and Oliver Ludwig and Stephanie Becker and Marco Backfisch and Wolfgang Kemmler and Michael Fröhlich},
 journal = {Journal of Sports Science & Medicine (JSSM)},
 month = {5},
 number = {2},
 pages = {271-281},
 publisher = {PMC - PubMed Central},
 title = {Effects of an Impulse Frequency Dependent 10-Week Whole-body Electromyostimulation Training Program on Specific Sport Performance Parameters},
 volume = {19},
 year = {2020}
}

Novel Is Not Always Better: On the Relation between Novelty and Dominance Pruning

2020 — Proceedings of the AAAI Conference on Artificial Intelligence

PDF
@article{grossNovelIsNotAlways2020,
 author = {Joschka Groß and Alvaro Torralba and Maximilian Fickert},
 doi = {10.1609/aaai.v34i06.6541},
 editor = {Vincent Conitzer and Fei Sha},
 journal = {Proceedings of the AAAI Conference on Artificial Intelligence},
 month = {4},
 number = {06: AAAI-20 Technical Tracks 6},
 pages = {9875-9882},
 publisher = {AAAI Press, Palo Alto, California, USA},
 title = {Novel Is Not Always Better: On the Relation between Novelty and Dominance Pruning},
 url = {https://cdn.aaai.org/ojs/6541/6541-13-9766-1-10-20200519.pdf},
 volume = {34},
 year = {2020}
}
DOI

Frequency-Dependent Reaction of the Triceps Surae Muscle of the Mouse During Electromyostimulation

2020 — Frontiers in Physiology

@article{zartFrequencyDependentReactionOfThe2020,
 author = {Sebastian Zart and Joshua Berger and Oliver Ludwig and Janosch Knauth and Michael Fröhlich},
 doi = {10.3389/fphys.2020.00150},
 editor = {Jae-Young Lim},
 journal = {Frontiers in Physiology},
 month = {2},
 pages = {150},
 publisher = {Frontiers Media SA},
 title = {Frequency-Dependent Reaction of the Triceps Surae Muscle of the Mouse During Electromyostimulation},
 volume = {11},
 year = {2020}
}
DOI

Poster Abstract: Birth-Death Processes Reproduce the Infection Footprint of Complex Networks

2020

@article{backenkohlerPosterAbstractBirthDeathProcesses2020,
 author = {Backenköhler, Michael and Grossmann, Gerrit},
 month = {01},
 pages = {},
 title = {Poster Abstract: Birth-Death Processes Reproduce the Infection Footprint of Complex Networks},
 year = {2020}
}

Whole-body electromyostimulation in physical therapy: do gender, skinfold thickness or body composition influence maximum intensity tolerance?

2020 — Journal of Physical Therapy Science (JPTS)

@article{bergerWholeBodyElectromyostimulationInPhysical2020,
 author = {Joshua Berger and Stephan Becker and Oliver Ludwig and Wolfgang Kemmler and Michael Fröhlich},
 doi = {10.1589/jpts.32.395},
 journal = {Journal of Physical Therapy Science (JPTS)},
 month = {1},
 number = {6},
 pages = {395-400},
 publisher = {The Society of Physical Therapy Science},
 title = {Whole-body electromyostimulation in physical therapy: do gender, skinfold thickness or body composition influence maximum intensity tolerance?},
 volume = {32},
 year = {2020}
}
DOI

2019

6 entries

Effects of a 6-Week Strength Training of the Neck Flexors and Extensors on the Head Acceleration during Headers in Soccer

2019 — Journal of Sports Science & Medicine (JSSM)

@article{beckerEffectsOfA6Week2019,
 author = {Stephanie Becker and Joshua Berger and Marco Backfisch and Oliver Ludwig and Jens Kelm and Michael Fröhlich},
 journal = {Journal of Sports Science & Medicine (JSSM)},
 month = {11},
 number = {4},
 pages = {729-737},
 publisher = {PMC - PubMed Central, USA},
 title = {Effects of a 6-Week Strength Training of the Neck Flexors and Extensors on the Head Acceleration during Headers in Soccer},
 volume = {18},
 year = {2019}
}

Empfehlungen zu Kontraindikationen für Ganzkörper-Elektromyostimulation im kommerziellen, nicht-medizinischen Setting: Recommendations of contraindications for whole-body electromyostimulation in a commercial, non-medical setting

2019 — Deutsche Zeitschrift für Sportmedizin

@article{kemmlerEmpfehlungenZuKontraindikationenFur2019,
 author = {Wolfgang Kemmler and Anja Wissenfels and S. Willert and M. Fröhlich and O. Ludwig and Joshua Berger and S. Zart and S. Becker and M. Backfisch and Heinz Kleinöder and U. Dörrmann and N. Wirtz and Bernd Wegener and Karl Lorenz Konrad and C. Eifler and J. Krug and C. Zinner and S. Müller and Jens Vatter and Sebastian Authenrieth and Thomas Beisswenger and M. Teschler and Simon von Thaden},
 doi = {10.5960/dzsm.2019.401},
 journal = {Deutsche Zeitschrift für Sportmedizin},
 month = {11},
 number = {11},
 pages = {278-282},
 publisher = {WWF Verlagsgesellschaft mbH},
 title = {Empfehlungen zu Kontraindikationen für Ganzkörper-Elektromyostimulation im kommerziellen, nicht-medizinischen Setting: Recommendations of contraindications for whole-body electromyostimulation in a commercial, non-medical setting},
 volume = {70},
 year = {2019}
}
DOI

The Impact of Whole-Body Electromyostimulation on Body Posture and Trunk Muscle Strength in Untrained Persons

2019 — Frontiers in Physiology

@article{ludwigTheImpactOfWholeBody2019,
 author = {Oliver Ludwig and Joshua Berger and Stephan Becker and Wolfgang Kemmler and Michael Fröhlich},
 doi = {10.3389/fphys.2019.01020},
 editor = {Kohei Watanabe},
 journal = {Frontiers in Physiology},
 month = {8},
 pages = {1020},
 publisher = {Frontiers Media SA},
 title = {The Impact of Whole-Body Electromyostimulation on Body Posture and Trunk Muscle Strength in Untrained Persons},
 volume = {10},
 year = {2019}
}
DOI

Adjustment effects of maximum intensity tolerance during whole-body electromyostimulation training

2019 — Frontiers in Physiology

@article{bergerAdjustmentEffectsOfMaximum2019,
 author = {Joshua Berger and Stephan Becker and Marco Backfisch and Christoph Eifler and Wolfgang Kemmler and Michael Fröhlich},
 doi = {10.3389/fphys.2019.00920},
 journal = {Frontiers in Physiology},
 month = {7},
 number = {920},
 pages = {1-8},
 publisher = {Frontiers Media S.A.},
 title = {Adjustment effects of maximum intensity tolerance during whole-body electromyostimulation training},
 url = {https://www.frontiersin.org/journals/physiology/articles/10.3389/fphys.2019.00920/full},
 volume = {10},
 year = {2019}
}
DOI URL

Evaluation of the Bourban Trunk Muscle Strength Test Based on Electromyographic Parameters

2019 — Journal of Functional Morphology and Kinesiology (JFMK)

@article{beckerEvaluationOfTheBourban2019,
 author = {Stephanie Becker and Joshua Berger and Marco Backfisch and Oliver Ludwig and Michael Fröhlich},
 doi = {10.3390/jfmk4020035},
 journal = {Journal of Functional Morphology and Kinesiology (JFMK)},
 month = {6},
 number = {2},
 pages = {35},
 publisher = {MDPI, Switzerland},
 title = {Evaluation of the Bourban Trunk Muscle Strength Test Based on Electromyographic Parameters},
 volume = {4},
 year = {2019}
}
DOI

Hidden Markov Modelling Reveals Neighborhood Dependence of Dnmt3a and 3b Activity

2019 — IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

@article{luckHiddenMarkovModellingReveals2019,
 author = {Alexander Lück and Pascal Giehr and Karl Nordström and Jörn Walter and Verena Wolf},
 doi = {10.1109/TCBB.2019.2910814},
 journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)},
 month = {4},
 number = {5},
 pages = {1598-1609},
 publisher = {IEEE},
 title = {Hidden Markov Modelling Reveals Neighborhood Dependence of Dnmt3a and 3b Activity},
 volume = {16},
 year = {2019}
}
DOI

2018

7 entries

Stochastic hybrid models of gene regulatory networks – A PDE approach

2018 — Mathematical Biosciences

@article{kurasovStochasticHybridModelsOf2018,
 author = {Pavel Kurasov and Alexander Lück and Delio Mugnolo and Verena Wolf},
 doi = {10.1016/j.mbs.2018.09.009},
 journal = {Mathematical Biosciences},
 month = {11},
 pages = {170-177},
 publisher = {Elsevier, Amsterdam},
 title = {Stochastic hybrid models of gene regulatory networks – A PDE approach},
 volume = {305},
 year = {2018}
}
DOI

Simulating the Large-Scale Erosion of Genomic Privacy Over Time

2018 — IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

@article{backesSimulatingTheLargeScaleErosion2018,
 author = {Michael Backes and Pascal Berrang and Mathias Humbert and Xiaoyu Shen and Verena Wolf},
 doi = {10.1109/TCBB.2018.2859380},
 journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)},
 month = {7},
 number = {5},
 pages = {1405-1412},
 publisher = {IEEE},
 title = {Simulating the Large-Scale Erosion of Genomic Privacy Over Time},
 volume = {15},
 year = {2018}
}
DOI

Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing

2018 — Nucleic Acids Research

@article{giehrTwoAreBetterThan2018,
 author = {Pascal Giehr and Charalampos Kyriakopoulos and Konstantin Lepikhov and Stefan Wallner and Verena Wolf and Jörn Walter},
 doi = {10.1093/nar/gky422},
 journal = {Nucleic Acids Research},
 month = {6},
 number = {15},
 pages = {1-10},
 publisher = {Oxford University Press},
 title = {Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing},
 volume = {46},
 year = {2018}
}
DOI

Algorithmen bei der Personalauswahl – eine kritische und hoffnungsvolle Betrachtung

2018 — Wirtschaftspsychologie aktuell

@article{langerAlgorithmenBeiDerPersonalauswahl2018,
 author = {Markus Langer and Kevin Baum and Cornelius J. König},
 doi = {10.22028/D291-31272},
 journal = {Wirtschaftspsychologie aktuell},
 pages = {36-42},
 publisher = {Deutscher Psychologen Verlag GmbH, Bonn},
 title = {Algorithmen bei der Personalauswahl – eine kritische und hoffnungsvolle Betrachtung},
 url = {https://publikationen.sulb.uni-saarland.de/handle/20.500.11880/29303},
 volume = {25},
 year = {2018}
}
DOI URL

Approximate adaptive uniformization of continuous-time Markov chains

2018 — Applied Mathematical Modelling

@article{andreychenkoApproximateAdaptiveUniformizationOf2018,
 author = {Alexander Andreychenko and Werner Sandmann and Verena Wolf},
 doi = {10.1016/j.apm.2018.05.009},
 journal = {Applied Mathematical Modelling},
 pages = {561-576},
 publisher = {ScienceDirect},
 title = {Approximate adaptive uniformization of continuous-time Markov chains},
 url = {https://www.sciencedirect.com/science/article/pii/S0307904X18302191},
 volume = {61},
 year = {2018}
}
DOI URL

Efficacy and Safety of Low Frequency Whole-Body Electromyostimulation (WB-EMS) to Improve Health-Related Outcomes in Non-athletic Adults. A Systematic Review

2018 — Frontiers in Physiology

@article{kemmlerEfficacyAndSafetyOf2018,
 author = {Wolfgang Kemmler and Anja Weissenfels and Sebastian Willert and Mahdieh Shojaa and Simon von Thaden and Andre Filipovic and Heinz Kleinöder and Joshua Berger and Michael Fröhlich},
 doi = {10.3389/fphys.2018.00573},
 journal = {Frontiers in Physiology},
 pages = {1-17},
 publisher = {Deutsche Nationalbibliothek},
 title = {Efficacy and Safety of Low Frequency Whole-Body Electromyostimulation (WB-EMS) to Improve Health-Related Outcomes in Non-athletic Adults. A Systematic Review},
 volume = {9},
 year = {2018}
}
DOI

Lumping of degree-based mean-field and pair-approximation equations for multistate contact processes

2018 — Phys. Rev. E

@article{kyriakopoulosLumpingOfDegreeBasedMeanField2018,
$ of the network, which is much smaller than the size of the master equation of the underlying stochastic model, yet numerically solving these equations can still be problematic for large $k_{\max}$. In this paper, we consider AME and PA, extended to cope with multiple local states, and we provide an aggregation procedure that clusters together nodes having similar degrees, treating those in the same cluster as indistinguishable, thus reducing the number of equations while preserving an accurate description of global observables of interest. We also provide an automatic way to build such equations and to identify a small number of degree clusters that give accurate results. The method is tested on several case studies, where it shows a high level of compression and a reduction of computational time of several orders of magnitude for large networks, with minimal loss in accuracy},
 author = {Kyriakopoulos, Charalampos and Grossmann, Gerrit and Wolf, Verena and Bortolussi, Luca},
 doi = {10.1103/PhysRevE.97.012301},
 issue = {1},
 journal = {Phys. Rev. E},
 month = {Jan},
 numpages = {15},
 pages = {012301},
 publisher = {American Physical Society},
 title = {Lumping of degree-based mean-field and pair-approximation equations for multistate contact processes},
 url = {https://link.aps.org/doi/10.1103/PhysRevE.97.012301},
 volume = {97},
 year = {2018}
}
DOI URL

2017

2 entries

Moment-Based Parameter Estimation for Stochastic Reaction Networks in Equilibrium

2017 — IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

@article{backenkohlerMomentBasedParameterEstimationFor2017,
 author = {Michael Backenköhler and Luca Bortolussi and Verena Wolf},
 doi = {10.1109/TCBB.2017.2775219},
 journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)},
 month = {11},
 number = {4},
 pages = {1180-1192},
 publisher = {IEEE},
 title = {Moment-Based Parameter Estimation for Stochastic Reaction Networks in Equilibrium},
 volume = {15},
 year = {2017}
}
DOI

H(O)TA: estimation of DNA methylation and hydroxylation levels and efficiencies from time course data

2017 — Bioinformatics

@article{kyriakopoulosHOTAEstimationOfDNA2017,
 author = {Kyriakopoulos, Charalampos and Giehr, Pascal and Wolf, Verena},
 doi = {10.1093/bioinformatics/btx042},
 eprint = {https://academic.oup.com/bioinformatics/article-pdf/33/11/1733/49039968/bioinformatics_33_11_1733.pdf},
 issn = {1367-4803},
 journal = {Bioinformatics},
 month = {06},
 number = {11},
 pages = {1733-1734},
 title = {H(O)TA: estimation of DNA methylation and hydroxylation levels and efficiencies from time course data},
 url = {https://doi.org/10.1093/bioinformatics/btx042},
 volume = {33},
 year = {2017}
}
DOI URL

2016

3 entries

Generalized method of moments for estimating parameters of stochastic reaction networks

2016 — BMC Systems Biology

@article{luckGeneralizedMethodOfMoments2016,
 author = {Alexander Lück and Verena Wolf},
 doi = {10.1186/s12918-016-0342-8},
 journal = {BMC Systems Biology},
 month = {10},
 number = {98},
 pages = {1-12},
 publisher = {BioMed Central, UK},
 title = {Generalized method of moments for estimating parameters of stochastic reaction networks},
 volume = {10},
 year = {2016}
}
DOI

The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach

2016 — PLOS Computational Biology

@article{giehrTheInfluenceOfHydroxylation2016,
 author = {Pascal Giehr and Charalampos Kyriakopoulos and Gabriella Ficz and Verena Wolf and Jörn Walter},
 doi = {10.1371/journal.pcbi.1004905},
 journal = {PLOS Computational Biology},
 month = {5},
 number = {5},
 pages = {1-16},
 publisher = {Public Library of Science},
 title = {The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach},
 volume = {12},
 year = {2016}
}
DOI

MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs

2016 — Cell Reports

@article{eckersleymaslinMERVLZscan4NetworkActivationResults2016,
 author = {Mélanie A. Eckersley-Maslin and Valentine Svensson and Christel Krueger and Thomas M. Stubbs and Pascal Giehr and Felix Krueger and Ricardo J. Miragaia and Charalampos Kyriakopoulos and Rebecca V. Berrens and Inês Milagre and Jörn Walter and Sarah A. Teichmann and Wolf Reik},
 doi = {10.1016/j.celrep.2016.08.087},
 issn = {2211-1247},
 journal = {Cell Reports},
 number = {1},
 pages = {179-192},
 title = {MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs},
 url = {https://www.sciencedirect.com/science/article/pii/S2211124716311962},
 volume = {17},
 year = {2016}
}
DOI URL

2015

2 entries

A note on reduced and von Neumann algebraic free wreath products

2015 — Illinois Journal of Mathematics (IJM)

@article{wahlANoteOnReduced2015,
\wr_{\ast} S_N^+$, where $\mathbb{G}$ is a compact matrix quantum group. Based on recent results on their corepresentation theory by Lemeux and Tarrago in [Lemeux and Tarrago (2014)], we prove that $\mathbb{G} \wr_{\ast} S_N^+$ is of Kac type whenever $\mathbb{G}$ is, and that the reduced version of $\mathbb{G} \wr_{\ast} S_N^+$ is simple with unique trace state whenever $N \geq 8$. Moreover, we prove that the reduced von Neumann algebra of $\mathbb{G} \wr_{\ast} S_N^+$ does not have property $\Gamma$.},
 author = {Jonas Wahl},
 doi = {10.1215/ijm/1475266409},
 journal = {Illinois Journal of Mathematics (IJM)},
 number = {3},
 pages = {801-817},
 publisher = {Duke University Press (im Auftrag der University of Illinois)},
 title = {A note on reduced and von Neumann algebraic free wreath products},
 url = {https://projecteuclid.org/journals/illinois-journal-of-mathematics/volume-59/issue-3/A-note-on-reduced-and-von-Neumann-algebraic-free-wreath/10.1215/ijm/1475266409.full},
 volume = {59},
 year = {2015}
}
DOI URL

Model Reconstruction for Moment-Based Stochastic Chemical Kinetics

2015 — ACM Transactions on Modeling and Computer Simulation (TOMACS)

@article{andreychenkoModelReconstructionForMomentBased2015,
 author = {Alexander Andreychenko and Linar Mikeev and Verena Wolf},
 doi = {10.1145/2699712},
 journal = {ACM Transactions on Modeling and Computer Simulation (TOMACS)},
 number = {2},
 pages = {1-19},
 publisher = {Association for Computing Machinery},
 title = {Model Reconstruction for Moment-Based Stochastic Chemical Kinetics},
 url = {https://dl.acm.org/doi/10.1145/2699712},
 volume = {25},
 year = {2015}
}
DOI URL

2014

1 entry

Method of conditional moments (MCM) for the Chemical Master Equation

2014 — Journal of Mathematical Biology (JOMB)

@article{hasenauerMethodOfConditionalMoments2014,
 author = {J. Hasenauer and Verena Wolf and A. Kazeroonian and F. J. Theis},
 doi = {10.1007/s00285-013-0711-5},
 journal = {Journal of Mathematical Biology (JOMB)},
 month = {9},
 number = {3},
 pages = {687-735},
 publisher = {Springer, Berlin, Heidelberg},
 title = {Method of conditional moments (MCM) for the Chemical Master Equation},
 volume = {69},
 year = {2014}
}
DOI

2013

1 entry

On-the-fly verification and optimization of DTA-properties for large Markov chains

2013 — Formal Methods in System Design

@article{mikeevOnTheFlyVerificationAndOptimization2013,
 author = {Linar Mikeev and Martin R. Neuhäußer and David Spieler and Verena Wolf},
 doi = {10.1007/s10703-012-0165-1},
 editor = {Nicht bekannt},
 journal = {Formal Methods in System Design},
 month = {10},
 number = {2},
 pages = {313-337},
 publisher = {Springer US, USA},
 title = {On-the-fly verification and optimization of DTA-properties for large Markov chains},
 volume = {43},
 year = {2013}
}
DOI

2012

3 entries

In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases

2012 — PLOS Genetics

@article{arandInVivoControlOf2012,
 author = {Julia Arand and David Spieler and Tommy Karius and Miguel R. Branco and Daniela Meilinger and Alexander Meissner and Thomas Jenuwein and Guoliang Xu and Heinrich Leonhardt and Verena Wolf and Jörn Walter},
 doi = {10.1371/journal.pgen.1002750},
 journal = {PLOS Genetics},
 month = {6},
 number = {6},
 pages = {1-11},
 publisher = {PLOS},
 title = {In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases},
 url = {https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1002750},
 volume = {8},
 year = {2012}
}
DOI URL

Three-valued abstraction for probabilistic systems

2012 — The Journal of Logic and Algebraic Programming (JLAP)

@article{katoenThreeValuedAbstractionForProbabilistic2012,
 author = {Joost-Pieter Katoen and Daniel Klink and Martin Leucker and Verena Wolf},
 doi = {10.1016/j.jlap.2012.03.007},
 journal = {The Journal of Logic and Algebraic Programming (JLAP)},
 month = {5},
 number = {4},
 pages = {356-389},
 publisher = {Elsevier, Amsterdam},
 title = {Three-valued abstraction for probabilistic systems},
 volume = {81},
 year = {2012}
}
DOI

Approximate maximum likelihood estimation for stochastic chemical kinetics

2012 — EURASIP Journal on Bioinformatics and Systems Biology

@article{andreychenkoApproximateMaximumLikelihoodEstimation2012,
 author = {Aleksander Andreychenko and Linar Mikeev and David Spieler and Verena Wolf},
 doi = {10.1186/1687-4153-2012-9},
 journal = {EURASIP Journal on Bioinformatics and Systems Biology},
 number = {1},
 pages = {1-14},
 publisher = {Springer Nature},
 title = {Approximate maximum likelihood estimation for stochastic chemical kinetics},
 url = {https://doi.org/10.1186/1687-4153-2012-9},
 volume = {2012},
 year = {2012}
}
DOI URL

2011

4 entries

Infinite level-dependent QBD processes and matrix-analytic solutions for stochastic chemical kinetics

2011 — Advances in Applied Probability

@article{dayarInfiniteLevelDependentQBDProcesses2011,
 author = {Tuğrul Dayar and Werner Sandmann and David Spieler and Verena Wolf},
 doi = {10.1239/aap/1324045696},
 journal = {Advances in Applied Probability},
 month = {12},
 number = {4},
 pages = {1005-1026},
 publisher = {Cambridge University Press},
 title = {Infinite level-dependent QBD processes and matrix-analytic solutions for stochastic chemical kinetics},
 volume = {43},
 year = {2011}
}
DOI

Bounding the equilibrium distribution of Markov population models

2011 — Numerical Linear Algebra with Applications

@article{dayarBoundingTheEquilibriumDistribution2011,
 author = {Tuǧrul Dayar and Holger Hermanns and David Spieler and Verena Wolf},
 doi = {10.1002/nla.795},
 journal = {Numerical Linear Algebra with Applications},
 month = {10},
 number = {6},
 pages = {931-946},
 publisher = {John Wiley & Sons, Ltd, England},
 title = {Bounding the equilibrium distribution of Markov population models},
 volume = {18},
 year = {2011}
}
DOI

Formalisms For Specifying Markovian Population Models

2011 — International Journal of Foundations of Computer Science

@article{henzingerFormalismsForSpecifyingMarkovian2011,
 author = {Thomas Henzinger and Barbara Jobstmann and Verena Wolf},
 doi = {10.1142/S0129054111008441},
 journal = {International Journal of Foundations of Computer Science},
 month = {6},
 number = {04},
 pages = {823-841},
 publisher = {World Scientific Publishing Company, Singapur},
 title = {Formalisms For Specifying Markovian Population Models},
 volume = {22},
 year = {2011}
}
DOI

Approximation of event probabilities in noisy cellular processes

2011 — Theoretical Computer Science (TCS)

@article{didierApproximationOfEventProbabilities2011,
 author = {Frédéric Didier and Thomas A. Henzinger and Maria Mateescu and Verena Wolf},
 doi = {10.1016/j.tcs.2010.10.022},
 journal = {Theoretical Computer Science (TCS)},
 month = {5},
 number = {21},
 pages = {2128-2141},
 publisher = {Elsevier, Amsterdam},
 title = {Approximation of event probabilities in noisy cellular processes},
 volume = {412},
 year = {2011}
}
DOI

2010

2 entries

Fast adaptive uniformisation of the chemical master equation

2010 — IET Systems Biology

@article{mateescuFastAdaptiveUniformisationOf2010,
 author = {M. Mateescu and Verena Wolf and F. Didier and T.A. Henzinger},
 doi = {10.1049/iet-syb.2010.0005},
 journal = {IET Systems Biology},
 month = {11},
 number = {6},
 pages = {441-452},
 publisher = {IET, UK},
 title = {Fast adaptive uniformisation of the chemical master equation},
 volume = {4},
 year = {2010}
}
DOI

Solving the chemical master equation using sliding windows

2010 — BMC Systems Biology

@article{wolfSolvingTheChemicalMaster2010,
 author = {Verena Wolf and Rushil Goel and Maria Mateescu and Thomas A. Henzinger},
 doi = {10.1186/1752-0509-4-42},
 editor = {Nicht bekannt},
 journal = {BMC Systems Biology},
 month = {4},
 number = {1},
 pages = {1-42},
 publisher = {BioMed Central},
 title = {Solving the chemical master equation using sliding windows},
 volume = {4},
 year = {2010}
}
DOI

2007

1 entry

Modelling of Biochemical Reactions by Stochastic Automata Networks

2007 — Electronic Notes in Theoretical Computer Science

@article{wolfModellingOfBiochemicalReactions2007,
 author = {Verena Wolf},
 doi = {10.1016/j.entcs.2007.05.017},
 editor = {Nicht bekannt},
 journal = {Electronic Notes in Theoretical Computer Science},
 month = {7},
 number = {2},
 pages = {197-208},
 publisher = {Elsevier, Amsterdam},
 title = {Modelling of Biochemical Reactions by Stochastic Automata Networks},
 volume = {171},
 year = {2007}
}
DOI

2006

4 entries

Trace Semantics for Stochastic Systems with Nondeterminism

2006 — Electronic Notes in Theoretical Computer Science

@article{wolfTraceSemanticsForStochastic2006,
 author = {Verena Wolf and Christel Baier and Mila Majster-Cederbaum},
 doi = {10.1016/j.entcs.2006.07.019},
 editor = {Nicht bekannt},
 journal = {Electronic Notes in Theoretical Computer Science},
 month = {10},
 number = {3},
 pages = {187-204},
 publisher = {Elsevier, Amsterdam},
 title = {Trace Semantics for Stochastic Systems with Nondeterminism},
 volume = {164},
 year = {2006}
}
DOI

Bisimulation and Simulation Relations for Markov Chains

2006 — Electronic Notes in Theoretical Computer Science

@article{baierBisimulationAndSimulationRelations2006,
 author = {Christel Baier and Holger Hermanns and Joost-Pieter Katoen and Verena Wolf},
 doi = {10.1016/j.entcs.2005.12.078},
 journal = {Electronic Notes in Theoretical Computer Science},
 month = {9},
 pages = {73-78},
 publisher = {Elsevier, Amsterdam},
 title = {Bisimulation and Simulation Relations for Markov Chains},
 volume = {162},
 year = {2006}
}
DOI

Trace Machines for Observing Continuous-Time Markov Chains

2006 — Electronic Notes in Theoretical Computer Science

@article{wolfTraceMachinesForObserving2006,
 author = {Verena Wolf and Christel Baier and Mila Majster-Cederbaum},
 doi = {10.1016/j.entcs.2005.10.042},
 editor = {Nicht bekannt},
 journal = {Electronic Notes in Theoretical Computer Science},
 month = {5},
 number = {2},
 pages = {259-277},
 publisher = {Elsevier, Amsterdam},
 title = {Trace Machines for Observing Continuous-Time Markov Chains},
 volume = {153},
 year = {2006}
}
DOI

A computational stochastic modeling formalism for biological networks

2006 — Enformatika Transactions on Engineering, Computing and Technology

@article{sandmannAComputationalStochasticModeling2006,
 author = {Werner Sandmann and Verena Wolf},
 journal = {Enformatika Transactions on Engineering, Computing and Technology},
 pages = {132-137},
 publisher = {o.A.},
 title = {A computational stochastic modeling formalism for biological networks},
 volume = {14},
 year = {2006}
}

2005

1 entry

Comparative branching-time semantics for Markov chains

2005 — Information and Computation (Inform. Comput.)

@article{baierComparativeBranchingTimeSemanticsFor2005,
 author = {Christel Baier and Joost-Pieter Katoen and Holger Hermanns and Verena Wolf},
 doi = {10.1016/j.ic.2005.03.001},
 journal = {Information and Computation (Inform. Comput.)},
 month = {8},
 number = {2},
 pages = {149-214},
 publisher = {Elsevier, Amsterdam},
 title = {Comparative branching-time semantics for Markov chains},
 volume = {200},
 year = {2005}
}
DOI